Amino Acids on the MCAT

Amino acids are critical for the MCAT as well as your biology and biochemistry courses. Amino Acids are the building blocks of living things playing key roles in cellular structure, function, and so much more.

This tutorial series will walk you through the different aspects of amino acids as required for the MCAT.

In-Progress Amino Acid Video Series: New Videos will be added weekly. (click to watch on YouTube)

MCAT Amino Acid Practice Quiz linked below.

mcat-amino-acids-Cheat-Sheet-previewAmino Acid Structures

Despite what your book may claim, you MUST MEMORIZE YOUR AMINO ACIDS! Students who’ve taken the new MCAT confirm that you must know the following for each amino acid:

  • Full Name
  • 3 letter abbreviation
  • 1 letter code
  • Side chain structure and characteristics
  • Charge/behavior at different pH values
  • and so much more…

But first… Let’s start with the basics

Amino Acids Tutorial Video MCAT Biochemistry Leah4sciVideo 1 – Introduction to Amino Acids

Before you dive in to memorize side chain characteristics, ask yourself WHY?

What is so special about this biomolecule? What is the logic behind ‘alpha carbonyl’ and why are there polar and non-polar, acidic and basic side chains. This video will help you set the stage for the entire series.

amino acid side chain characteristics by leah fischTutorial: Understanding Amino Acid Side-Chain Characteristics

It’s not enough to memorize names and structures.

You need to UNDERSTAND how each specific R-group contributes to that groups chemistry and participation in 3-dimension structures and reactions.

This tutorial breaks down the side chain groups to help you understand their individual classifications.

Hydrophobic Amino Acids Neutral Non Polar tutorial Video by Leah FischHydrophobic Non-Polar Neutral Amino Acids

These amino acids may appear out of place in an aqueous biological environment, but they are in fact critical to completing the amino acid picture.

Hydrophobic amino acids feature water fearing neutral and non-polar side chains. This video explains their names, and side chain functional groups/structure.

Polar Acidic and Basic Amino Acids tutorial video by Leah FischPolar, Acidic and Basic Amino Acids

Hydrophilic amino acids are rather ‘exciting’ and reactive compared to the hydrophobic groups.

This video walks you through the polar neutral, acidic, and basic amino acids and their side chain characteristics.

Zwitterions:

Ever notice that amino acids are written with both a positive N and negative O in the same structure? Why? How do you determine the charge of any group within an amino acid or polypeptide?

How does all this relate to the Isoelectric Point or pI?

Tutorial: Amino Acid Charge – Zwitterions and Isoelectric Point

amino acid amine deprotonation reaction equilibrium

Amino Acid Stereochemistry RS DLAmino Acid Stereochemistry R/S, D/L, Fischer Projections

Amino Acids are biologically active molecules. 19 of the 20 common amino acids have a chiral alpha carbon. This video shows you how to find R and S on linear molecules and convert them to R/S or D/L Fischer projections.

Learn to do it the right (read: long) way, then learn my quick amino acid chirality shortcut

Zwitterion and Amino Acid Charges given pH pKa tutorial videoZwitterion and Amino Acid Charge

Zwitterion or ‘double ion’ refers to a molecule with a net neutral charge despite wielding a positive and negative charge.

This video shows you how to recognize the zwitterion, how to find it’s ideal pH, and how to find amino acid charge at ANY pH.

Isoelectric Point of Amino Acidss with MCAT Shortcut Leah4sci

Isoelectric Point of Amino Acids with MCAT shortcut

Isoelectric point or pI of amino acids is the pH at which the zwitterion exists. In other words, it’s the pH at which an amino acid has a net neutral charge.

This video shows you how to quickly calculate the pI of amino acids with 2 or 3 pKa values.

Peptide charge and isoelectric point pI tutorial video

Peptide Charge and Isoelectric Point Shortcut

Calculating the charge or pI – isoelectric point peptides is trickier than a simple Amino Acid charge or pI.

This video shows you how to quickly find pI and charge of dipeptides, tripeptides, and even short chain polypeptides.

Strecker Synthesis of Alpha Amino Acids MCAT Tutorial Video

Strecker Synthesis of Alpha Amino Acids

Strecker Synthesis is the earliest known method to synthesis an alpha amino acid.

This video walks you through the overall reaction followed by a step by step breakdown of key mechanism components. This is one of the 2 amino acid synthesis reactions required for the MCAT.

Gabriel Malonic Ester Alpha Amino Acid Synthesis Tutorial VideoGabriel Malonic Ester Synthesis of Amino Acids

This reaction is another popular method for synthesizing alpha amino acids. This reaction is a combination of the Gabriel Amine Synthesis and the Malonic Ester Synthesis reactions.

This video breaks down the overall reaction followed by a walk-through of key mechanism components.

This is the second of 2 amino acid synthesis reactions required for the MCAT.

Amino Acid Peptide Linkage and Hydrolysis Reactions MCAT by Leah Fisch.png

Peptide Linkage and Hydrolysis Reactions of Amino Acids (Coming Soon)

Amino acids are the building blocks of living things. This makes the process of making/breaking bonds critical to understanding biological sciences.

This video walks you through the formation of an amino acid bond – the peptide bond, as well as breaking the bonds through hydrolysis.

 

Even More Tutorials To Follow:

  • Disulfide Bridges

Read to test your knowledge of amino acids? Try the Amino Acids Practice Quiz

Don’t forget to download the FREE Amino Acids Cheat Sheet Study Guide